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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs139305843 chr1:41646808 G/C 2.8E-7 490 14.92 17.77 17.47 KM Plot
THCA rs139435578 chr3:127639580 AAT/A 0 489 16.27 14.97 6.03 KM Plot
THCA rs139441695 chr1:41557601 GA/G 3.69E-12 488 17.7 17.73 14.93 KM Plot
THCA rs139448335 chr2:48053829 A/AT 1.08E-7 488 15.32 17.93 8.27 KM Plot
THCA rs139458943 chr6:24497823 G/A 3.31E-9 488 16.38 14.8 12.67 KM Plot
THCA rs139473885 chr14:59765056 A/ATC 1.4E-8 488 16.38 12.62 5.45 KM Plot
THCA rs139537724 chr2:241523664 G/A 2.09E-11 484 15.9 15.42 19.27 KM Plot
THCA rs139547421 chr2:48067267 A/G 1.02E-7 489 15.33 17.93 8.27 KM Plot
THCA rs139588058 chr21:37472191 G/A 5.45E-12 469 16.63 14.55 12.2 KM Plot
THCA rs139610805 chr14:59832618 TAACA/T 0.000235 490 16.2 15 5.45 KM Plot
THCA rs139704513 chr4:57186017 GCAATGATAATCCC/G 1.2E-7 485 16.02 14.98 12.67 KM Plot
THCA rs139732094 chr11:93831127 CTT/C 4.95E-5 489 15.33 16.73 8.42 KM Plot
THCA rs139735619 chr13:24891739 T/TTTATC 0.000303 485 15.17 17.75 17.08 KM Plot
THCA rs139788761 chr5:96250717 T/A 3.27E-6 489 15.83 16.92 17.7 KM Plot
THCA rs139834378 chr7:29827253 A/C 8.87E-5 485 16.22 15.17 12.83 KM Plot